Distribution of the light skin gene in India shows an ancient, pre-agriculture coalescence with Europeans

Recent research shows that the presence of the genetic mutation for lighter skin – found in almost 100%” of Europeans – broadly conforms to many cultural and linguistic differences, as well as ancestral, in the wider Indian population.

Distribution of Light Skin Allele of SLC24A5  - Basu Mallick et al

Distribution of Light Skin Allele of SLC24A5 – Basu Mallick et al

Basu Mallick C, Iliescu FM, Möls M, Hill S, Tamang R, et al. (2013) The Light Skin Allele of SLC24A5 in South Asians and Europeans Shares Identity by Descent. PLoS Genet 9(11): e1003912. doi:10.1371/journal.pgen.1003912

Author Summary: Human skin color is one of the most visible aspects of human diversity. The genetic basis of pigmentation in Europeans has been understood to some extent, but our knowledge about South Asians has been restricted to a handful of studies. It has been suggested that a single nucleotide difference in SLC24A5 accounts for 25–38% European-African pigmentation differences and correlates with lighter skin. This genetic variant has also been associated with skin color variation among South Asians living in the UK. Here, we report a study based on a homogenous cohort of South India. Our results confirm that SLC24A5 plays a key role in pigmentation diversity of South Asians. Country-wide screening of the variant reveals that the light skin associated allele is widespread in the Indian subcontinent and its complex patterning is shaped by a combination of processes involving selection and demographic history of the populations. By studying the variation of SLC24A5 sequences among a diverse set of individuals, we show that the light skin associated allele in South Asians is identical by descent to that found in Europeans. Our study also provides new insights into positive selection acting on the gene and the evolutionary history of light skin in humans.

While this paper does not specifically address or prove that the Indian caste system is entirely dependent upon race and skin colour, it does suggest that race and skin colour were important ingredients in the establishment of the caste system. And the origins were ancient and pre-date the spread of agriculture:

We date the coalescence of the light skin associated allele at 22–28 KYA. Both our sequence and genome-wide genotype data confirm that this gene has been a target for positive selection among Europeans. However, the latter also shows additional evidence of selection in populations of the Middle East, Central Asia, Pakistan and North India but not in South India.

From the Cambridge University Press Release:

The genetic mutation in SLC24A5 is known to be pivotal in the evolution of light skin, and is responsible for a significant part of the skin colour differences between Europeans and Africans.

Now, a new study has examined for the first time a large, uniform genetic sample collected directly in south India, and suggests that natural selection is not the sole factor in skin tone variation across the Indian sub-continent, and that cultural and linguistic traits still delineate this skin pigment genetic mutation. 

The results show that the gene is found with much higher frequency in Indo-European speaking groups that are more prevalent in the north-west of the country.

But the mutation is also high in populations groups known to have migrated north to south, such as the Saurashtrians, who – while native to Gujarat in north-west India – are now predominantly found in the Madurai district in its southernmost tip.

Researchers say that the study, published last week in the journal PLoS Genetics, shows that the genetic mutation in SLC24A5 has a common origin between Europeans and Indians.

But while the complete dominance of the gene in Europeans is likely to be solely down to natural selection, they say, the rich diversity of this genetic variant in India – high in some populations while non-existent in others, even neighbouring ones – has some correlation with factors of language, ancestral migration and distinct social practices such as limiting marriage partners to those with specific criteria.

The researchers say the findings display an “intriguing interplay” between natural selection and the “unique history and structure” of populations inhabiting the Indian subcontinent.         

“In India, this genetic variant doesn’t just follow a ‘classical’ theory of natural selection – that it’s lower in the south where darker skin protects against fiercer sunlight,” said study co-author Mircea Iliescu from Cambridge’s Biological Anthropology Division.

“The distribution of the SLC24A5 genetic variant in India follows patterns very much influenced by population. Understanding the genetic architecture behind the remarkable skin colour variation found today in the populations of India has the potential to shed light on the wider mechanisms responsible for creating diversity throughout human evolution,” Iliescu said.

In the 1950s it was proposed that there was a massive wave of European migration into northern India a few thousand years ago, described as the ‘Aryan invasion’, which led to the collapse of the Harrapan Civilisation – a Bronze-Age Civilisation.

This theory, now considered widely discredited by many researchers due to the lack of archaeological evidence, is still a hugely debated issue in contemporary Indian politics – invoked by political parties in the southern states of India who claim that the southern populations, described by some as the ‘Dravidians’, are the truly indigenous people of India.

The researchers say that, while speculative, they find it “hard to imagine” a large-scale population migration at a single point in history based on this study – since the presence of this genetic mutation is too widespread, with an average frequency of 53%, including the Austroasiatic language groups thought to have originated in southeast Asia.

They say the wide variation and complex pattern hints at the possibility of multiple “gene flows” into the sub-continent over a much longer period of time, some of which might be linked to the spread of agriculture; although the study does show higher frequencies of SLC24A5 in Indo-European speaking groups compared to so-called Dravidian populations.

The researchers suggest that aspects of ‘social selection’, such as high levels of ‘endogamy’ – marriage within a particular group in accordance with custom – as a result of the caste system, has created a “mosaic pattern” for this skin pigmentation mutation across Indian populations.

“This study helps us to understand various other mechanisms that could have contributed or shaped the existing biological spectrum of human skin colour besides natural selection – driven by ultraviolet rays – and further understanding of this complex phenotypic trait,” said Chandana Basu Mallick, a co-author on the study from the University of Tartu in Estonia.

“We are taking gradual steps towards understanding the evolutionary history of this adaptive trait, and the journey of our ancestors from fur to the diverse skin tones of the present day.”

“Our work addresses human diversity, diversity which should be celebrated,” added Iliescu. “It tries to explain the origins and history of this diversity – opening up a window into a different kind of history, not just a history of places and objects, but a living history which helps us to better understand ourselves.”

“Studies on Indian populations have been under-represented in the genomic era, and the understanding of Indian genetics is still at a very early stage. With this study, we hope we’ve brought valuable new understanding to the evolutionary genetics of Indian populations.”

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About ktwop

Scientist, technologist, salesman, manager, executive and now a consultant and author.
This entry was posted in Agriculture, Ancestors, Evolution, Generations, Peopling the world and tagged , , , , , . Bookmark the permalink.

3 Responses to Distribution of the light skin gene in India shows an ancient, pre-agriculture coalescence with Europeans

  1. Di Wang says:

    All human beings are created by God.

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